Journal: Analytical Chemistry
Article Title: Immunomagnetic Sample Preparation Targeting Host- and Viral-Derived Antigens for HIV‑1 Isolation from Limited Plasma Volumes
doi: 10.1021/acs.analchem.5c06176
Figure Lengend Snippet: Immunoconjugate-mediated capture of HIV-1 from clinical specimens. Five specimens with viral loads ranging from 107,024 to 1,393,440 copies/mL were used. n = 2–3 technical replicates/specimen and n = 3–5 clinical specimens/conjugate, except gp120, gp41, CD45, CD86, ICAM-1, and CD11a/CD18 LFA-1 ( n = 1 specimen) were used. A. % Captured HIV-1 by immunoconjugates incubated with HIV-positive plasma. Healthy human plasma acted as a negative control. Beads or isotype controls show nonspecific capture of HIV-1. B. Captured HIV-1 RNA copies by immunoconjugates incubated with 25 μL patient specimens. C. Captured HIV-1 RNA copies by CD46 immunoconjugate incubated with increasing volumes of HIV-positive plasma (ID #1654, VL: 384,000 copies/mL), ranging from 2 to 50 μL ( n = 2–3 technical replicates). D. % Captured HIV-1 by the combination of CD46 and CD44 immunoconjugate incubated with patient plasma (ID #1654, VL: 384,000 copies/mL). CD44 (1.6 mg) and CD46 (1.6 mg) were used alone or in combination (0.8 mg each, total 1.6 mg). The no capture control shows the input copies present in 25 μL of HIV-positive human plasma, measured by RT-qPCR. The isotype control shows nonspecific capture by IgG isotype armed microbeads. No-capture control served as the baseline HIV RNA copies in the different plasma volumes ( n = 1–3 replicates).
Article Snippet: Mouse IgG antibodies: CD8 (UCH-T4), Cat # sc-1181, Santa Cruz Biotechnology, Inc.; CD18 (Integrin beta-2), Clone ID H52-s, DSHB (Developmental Studies Hybridoma Bank); HIV1gp120, Cat # sc-57810, Santa Cruz Biotechnology, Inc.; CD26, Cat # 555435, BD Pharmingen; integrin alpha-4, Clone ID P4G9, DSHB; CD43 (DF-T1), Cat # sc-6256, Santa Cruz Biotechnology, Inc.; CD46 (1E3D1), Cat # MA5-29113, Invitrogen; β 2 -microglobulin (B2M-01), Cat # MA1–19141, Invitrogen; integrin alpha-L (CD11a), Clone ID MHM.24, DSHB; CD86 (B7-2), Clone ID IT2.2, Invitrogen; CD44, Clone ID H4C4, DSHB; ICAM1, Clone ID P2A4, DSHB; CD45, Clone ID H5A5, DSHB; HLA-DR, Clone ID LN3, Cat # 14-9956-82, Thermo Fisher Scientific; Tim-4 (human):Fc (mouse) (rec.), Cat # CHI-HF-211T4-C100, AdipoGen Life Sciences.
Techniques: Incubation, Clinical Proteomics, Negative Control, Control, Quantitative RT-PCR